The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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CyVerse systems will be unavailable, as follows:

Access to ALL CyVerse systems will be impacted during network equipment upgrades of core network equipment upgrades from Sunday, May 28 at 12 Midnight to Monday, May 29 at 8:00 AM (check your local timezone here).

CyVerse will perform regular maintenance on key systems on Tuesday, May 30 from 8 AM to 4 PM MST. Access to or usage of the following services will be unavailable or disrupted:

  • Discovery Environment: Currently running analyses will be terminated. Please plan accordingly.
  • Data Store: Unavailable during the maintenance period.
  • Atmosphere: Atmosphere instances will continue to run, but access to instances or to the web interface will be unavailable.
  • Agave/Science API: Unavailable during the maintenance period.
  • CyVerse User Portal: Unavailable during the maintenance period.

Please contact for any questions or concerns.

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PcPipe 1.0.0 

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PcPipe is a pipeline that implements a series of steps for protein clustering and annotation. 1: User defined proteins are clustered with proteins from known protein clusters. 2: Proteins that do not cluster are self-clustered to form novel protein clusters. 3: Proteins from novel self-clusters are compared to a reference set of proteins from the Similarity Matrix of Proteins (SIMAP). 4: Annotations from SIMAP proteins are assigned to each hit from the novel protein clusters.

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