trimseq reads one or more sequences and writes the same sequences out, but removing any regions at the start and / or end that contain unwanted characters. These include gap characters (where occur the sequences have been aligned), X's and N's (in nucleotide sequences), *'s (optionally) and (optionally) IUPAC ambiguity codes.
To use trimseq, upload your input data in fasta format.
- Test input in fasta format: Community Data -> iplantcollaborative -> example_data ->EMBOSS -> Input -> untrimmed_myseq.txt
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Standard EMBOSS output sequence file. Trimmed sequence can be in fasta format by default.
- Expected output files: Community Data -> iplantcollaborative -> example_data -> EMBOSS -> Output -> trimseq.output