trimseq reads one or more sequences and writes the same sequences out, but removing any regions at the start and / or end that contain unwanted characters. These include gap characters (where occur the sequences have been aligned),
N's (in nucleotide sequences),
*'s (optionally) and (optionally) IUPAC ambiguity codes.
To use trimseq, upload your input data in fasta format.
- Test input in fasta format: Community Data -> iplantcollaborative -> example_data ->EMBOSS -> Input -> untrimmed_myseq.txt
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Standard EMBOSS output sequence file. Trimmed sequence can be in fasta format by default.
- Expected output files: Community Data -> iplantcollaborative -> example_data -> EMBOSS -> Output -> trimseq.output