The master copies of EMBOSS documentation are available at http://emboss.open-bio.org/wiki/Appdocs on the EMBOSS Wiki.
splitter splits one or more input sequences into smaller, optionally overlapping, subsequences. The subsequence size and overlap (if any) may be specified. Optionally, feature information will be used.
To use splitter, upload your input data in GenBank, Embl, or Emsembl formats.
- Resource: More information on input sequence feature and format could be found at https://pods.iplantcollaborative.org/wiki/display/sciplant/EMBOSS+Sequence+Feature+Format
The input is a standard EMBOSS sequence query (also known as a 'USA', Uniform Sequence Address) with associated feature information, such as Genbank, Embl, and Ensembl formats.
- Test input in GenBank sequence format: Community Data -> iplantcollaborative -> example_data ->EMBOSS -> Input -> BA000025.txt
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Standard EMBOSS output sequence file.
- Expected output files: Community Data -> iplantcollaborative -> example_data -> EMBOSS -> Output -> splitter.output