The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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The master copies of EMBOSS documentation are available at on the EMBOSS Wiki.

EMBOSS Splitter

splitter splits one or more input sequences into smaller, optionally overlapping, subsequences. The subsequence size and overlap (if any) may be specified. Optionally, feature information will be used.

Quick Start

To use splitter, upload your input data in GenBank, Embl, or Emsembl formats.

Test Data

Input File

The input is a standard EMBOSS sequence query (also known as a 'USA', Uniform Sequence Address) with associated feature information, such as Genbank, Embl, and Ensembl formats.

  • Test input in GenBank sequence format: Community Data -> iplantcollaborative -> example_data ->EMBOSS -> Input -> BA000025.txt

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Standard EMBOSS output sequence file.

  • Expected output files: Community Data -> iplantcollaborative -> example_data -> EMBOSS -> Output -> splitter.output

Tool Source

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