The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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Upcoming iPlant maintenance: Tuesday, March 31 from 8:00 AM MST to 5:00 PM MST

Check your local timezone here.
Access to or usage of the following services may be unavailable or disrupted:

  • Discovery Environment: The Discovery Environment will be unavailable while DE version 1.9.6 is deployed. ALL CURRENTLY RUNNING ANALYSIS JOBS WILL BE CANCELED. Please plan your jobs accordingly.
  • Data Store: The Data Store will be unavailable during the maintenance.
  • Bisque Image Processing: Bisque processing via the DE will be unavailable from the DE.
  • CoGe Processing: CoGe data processing via the DE will be unavailable from the DE.
  • Atmosphere:
    • Atmosphere instances will continue to run, but you will not be able to launch new instances during the maintenance period.
    • Instances will not be able to access the Data Store during the maintenance.
    • Any FUSE-mounted directories will need to be remounted after the maintenance.

We apologize for any inconvenience. If you have any questions or concerns, please contact iPlant Support.

Discovery Environment Applications List

The list shown below is a current list of all apps and their documentation that is available in the current release of the Discovery Environment.

This list is populated automatically when an app or workflow is shared by its integrator. The documentation for each app that is available in the links below was generated when the app's integrator shared the app with the public. If you shared an app or workflow, please be sure to update your app's documentation so it is useful for other DE users.

To open an app in the Discovery Environment, click the Apps icon in the main Discovery Environment window.
You also can view the same documentation within the DE.

Definitions of tools, applications, and analyses appear at Understanding Tools and Applications.

If a software tool or version of a software tool that you would like to use is not currently available, you can request that it be installed.

Want to remove an app?

iPlant will respond to any request to remove any integrated software tool being used by an application at the request of the tool's copyright owner. To have us do so, please contact us at support@iplantcollaborative.org. Please remember that if you request your tool be removed, it will not be able to be used by the community in the iPlant Discovery Environment and any applications that use the tool will cease to function.

Your app not listed?
Several high-performance apps have been disabled as our team is working on making more robust versions of these apps available. Please check the High-Performance Computing category in the DE Apps window to see if an updated version of your app is now available.

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