The applications listed here are available for use in the Discovery Environment and are documented in: Discovery Environment Manual.

Discovery Environment Applications List

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MAINTENANCE UPDATE

A Data Store node encountered a hardware failure during our recent maintenance that may impact accessibility to some data. CyVerse staff is working to recover the node, and we expect the impacted data will be intact and recovered within 72 hours.

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CEGMA: Core Eukaryotic Genes Mapping Approach

Core Eukaryotic Genes Mapping Approach, a "method [...] for building a highly reliable set of gene annotations in the absence of experimental data [using] a set of 458 core proteins that are present in a wide range of taxa."

NOTE: Development of CEGMA has been discontinued. 

See this notice. The Discovery Environment will continue to host CEGMA for a little while longer, but it may not work properly. We recommend that users switch to alternative tools, such as BUSCO in the Discovery Environment.

Quick Start

  • To use CEGMA, load your genome in FASTA format.
  • Resources: Understanding CEGMA output

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Tool Source for App

7 Comments

  1. ★★★★★ This is the bee's knees. (by mcrusoe)

  2. ★★★★☆ null (by kapeelc)

  3. ★★★★★ Works greatly! (by paw150)

  4. ★★★★★ null (by cantdario)

  5. ★☆☆☆☆ Loading (by mussomoro)